forgemia.inra.fr | Ecosyste.ms: Repos

A quick overview of the changes of Covid-19 mortality in the most affected countries of the European Union + the United Kingdom and of Africa. https://umr-astre.pages.mia.inra.fr/covid19-mortality/

Last synced at: 6 months ago - Stars: 0 - Forks: 0

lidar/lidarHD

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

umr-astre/force_of_infection_lidiski

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

umr-astre/nimbletempdev

R package for modelling arthropod development rates (mean and variance) as a function of temperature in nimble. Adapted from the PhD work of Soledad Castano (http://www.theses.fr/223623849).

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

umr-astre/asf-challenge

Collaborative repository of the ASTRE team for the ASF challenge. https://www6.inrae.fr/asfchallenge/

Last synced at: 5 months ago - Stars: 0 - Forks: 1

jvenn is a plug-in for the jQuery Javascript library. It is a flexible tool, based upon the venny tool first developed by J.C Oliveros (Oliveros, J.C (2007) VENNY, An integrative tool for comparing lists with Venn Diagrams).

Last synced at: 5 months ago - Stars: 1 - Forks: 1

umr-astre/sit-methods

https://umr-astre.pages.mia.inra.fr/sit-methods/

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

umr-astre/sit-reunion

Population suppression using boosted-SIT technique in La Réunion. https://umr-astre.pages.mia.inra.fr/sit-reunion/

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

umr-astre/fmd_risk_validation

Validation of a qualitative risk assessment of Foot-and-Mouth Disease in Tunisia with observed data. https://umr-astre.pages.mia.inra.fr/fmd_risk_validation/

Last synced at: 5 months ago - Stars: 0 - Forks: 0

genotoul-bioinfo/dgenies

Dotplot large Genomes in an Interactive, Efficient and Simple way

Last synced at: 5 months ago - Stars: 3 - Forks: 0

umr-astre/culicoides-friction

Dispersion of _Culicoides imicola_ using friction maps https://umr-astre.pages.mia.inra.fr/culicoides-friction

Last synced at: 5 months ago - Stars: 0 - Forks: 0

umr-astre/capiche

Epidemics at the interface between domestic and wild swines in Corse (ContActs Pigs CorsE). https://umr-astre.pages.mia.inra.fr/capiche/

Last synced at: 5 months ago - Stars: 0 - Forks: 0

umr-astre/topomatch

Match toponyms by similarity

Last synced at: 5 months ago - Stars: 0 - Forks: 0

umr-astre/geonetwork

Networks/graphs with geo-localised nodes https://umr-astre.pages.mia.inra.fr/geonetwork/

Last synced at: 5 months ago - Stars: 0 - Forks: 0

umr-astre/sit-sudan

https://umr-astre.pages.mia.inra.fr/sit-sudan

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

dipso/bridge-datainrae-nextcloud

App Nextcloud permettant de publier des fichiers du Nextcloud INRAE vers DataINRAE

Last synced at: 6 months ago - Stars: 1 - Forks: 0

umr-astre/confint_ratio

Confidence intervals for a ratio of variables. https://umr-astre.pages.mia.inra.fr/confint_ratio/

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

umr-astre/difuse

Projet Difuse Activite 1: Caractérisation de la diversité des pratiques et des points de vue des acteurs manifestant leur volonté de s’engager dans le changement face aux urgences socio-écologiques au sein la Recherche Pour le Développement.

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

umr-astre/epidmap

Last synced at: 5 months ago - Stars: 0 - Forks: 0

bibliome/text-classification

Last synced at: 7 months ago - Stars: 0 - Forks: 0

datasets/envirotyping_sunrise

Dataset for the environmental characterization of the field experiments conducted in the SUNRISE project

Last synced at: 6 months ago - Stars: 0 - Forks: 0

bibliome/pesv-tm

Last synced at: 6 months ago - Stars: 0 - Forks: 0

public-pgba/submission_ena

Last synced at: 5 months ago - Stars: 0 - Forks: 1

bios4biol/workflows

List of workflows (nextflow/snakemake) tested for Genotoul Cluster.

Last synced at: 5 months ago - Stars: 2 - Forks: 2

bibliome/formation-alvisnlp

Last synced at: 5 months ago - Stars: 4 - Forks: 1

umr-gdec/isbpfinder

isbpFinder is a Perl script dedicated to design ISBP (Insertion Site Based Polymorphism) markers.

Last synced at: 5 months ago - Stars: 0 - Forks: 0

umr-gdec/biotools

Perl scripts.

Last synced at: 5 months ago - Stars: 0 - Forks: 0

bios4biol/bioinfo-utils

Last synced at: 5 months ago - Stars: 1 - Forks: 1

anaee-dev/docker_registry

Projet pour déposer les images docker générées dans les autres projets anaee-dev

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

genotoul-bioinfo/metagwgs-test-datasets

Repository containing input and output datasets to perform tests on metaGWGS

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

GNet/cytopheno_omics

Last synced at: 5 months ago - Stars: 0 - Forks: 0

anaee-dev/coby

Annotation pipeline (transform SGBDR/CSV data to rdf)

Last synced at: 5 months ago - Stars: 0 - Forks: 0

urgi-anagen/caulifinder_docker

In frame of EVENT project, all code to build a docker image for the Caulifinder tool. It allows discovering Caulimoviridae sequences in plant genomes.

Last synced at: 6 months ago - Stars: 0 - Forks: 0

genotoul-bioinfo/ng6

nG6

Last synced at: 5 months ago - Stars: 5 - Forks: 0

genotoul-bioinfo/srna-tabac

This project is dedicated to targets prediction of bacterial non-coding RNA and their visualisation through a web interface.

Last synced at: 5 months ago - Stars: 0 - Forks: 0

genotoul-bioinfo/dgenies-viewer

A viewer using D-Genies

Last synced at: 5 months ago - Stars: 0 - Forks: 0

genotoul-bioinfo/jflow

We introduce jflow, a Workflow Management System (WMS), composed of Jquery plugins which can easily be embedded in any WEB application and a Python library providing all requested features to setup, run and monitor workflows.

Last synced at: 5 months ago - Stars: 0 - Forks: 0

omnicrobe/extended-microorganisms-taxonomy

Last synced at: 6 months ago - Stars: 0 - Forks: 0

asterics/user_documentation

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

canular/presentation-canular

Projet pour élaborer le support de présentation du projet CANULAR. Le document est en LaTeX et le CI/CD permet de générer directement un fichier PDF.

Last synced at: 7 months ago - Stars: 0 - Forks: 0

geekus-biologicae/gitrstudio

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

asterics/asterics

Last synced at: 6 months ago - Stars: 3 - Forks: 0

singularity/bioinfo/bcftools_v1.15

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

get-nextflow-ngl-bi/test-data

Repository of test data

Last synced at: 6 months ago - Stars: 0 - Forks: 0

formationcalcul2023/formation-linux

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 1

hackathon-portail-calcul/criteres

Last synced at: 6 months ago - Stars: 0 - Forks: 1

urgi-anagen/te_finder

A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.

Last synced at: 5 months ago - Stars: 1 - Forks: 0

umrf/dairydb

Last synced at: 6 months ago - Stars: 1 - Forks: 0

umrf/utopia

UTOPIA: an automatically UpdaTed, cOmPlete and consistent ITS reference dAtabase

Last synced at: 5 months ago - Stars: 1 - Forks: 0

inter_cati_omics/hackathon_snakemake_singularity_stats

Singularity receipe for stats software stack used in snakemake short tutorial

Last synced at: 6 months ago - Stars: 0 - Forks: 0

prose/deepomics-submission

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

biocom/biocom-pipe_manual

Latex manual source code

Last synced at: 6 months ago - Stars: 0 - Forks: 0

metexplore/met4j

Java library for metabolic networks

Last synced at: 5 months ago - Stars: 3 - Forks: 2

umr-astre/spreadrate

Estimate the spread-rate of epidemics https://umr-astre.pages.mia.inra.fr/spreadrate/

Last synced at: 5 months ago - Stars: 0 - Forks: 0

umr-astre/cirad

Cirad institutional LaTeX package

Last synced at: 5 months ago - Stars: 0 - Forks: 0

gafl/snakemake_modules

Last synced at: 6 months ago - Stars: 0 - Forks: 1

umr-astre/amr-laos

Multiple Factor Analysis (MFA) of Knowledge-Attitude-Practice survey responses of Laos' farmers on Antimicrobial resistance.

Last synced at: 6 months ago - Stars: 0 - Forks: 0

umr-astre/ppp-oie

Last synced at: 6 months ago - Stars: 0 - Forks: 0

public-pgba/is900-rflp-in-silico

Last synced at: 6 months ago - Stars: 0 - Forks: 0

record-open-archives/recmoustics

archive du projet recmoustics Un modèle d'irrigation couplé au modèle bio-physique STICS

Last synced at: 5 months ago - Stars: 0 - Forks: 0

record-open-archives/rec-crash

The computer-model tool CRASH (Crops Rotation and Allocation Simulator using Heuristics) aims at helping technical advisors in supporting farmers in their choices and anticipating agricultural water needs depending on crop acreage.

Last synced at: 5 months ago - Stars: 0 - Forks: 0

agriterix/doc

Documentation and presentation materials of the project

Last synced at: 6 months ago - Stars: 0 - Forks: 0

work4graph/bootcamp-neo4j-2022

Organisation d'un bootcamp autour de l'intégration et la visualisation de données avec Neo4J, adossé en amont d'une formation Neo4J en ligne. Site web : https://work4graph.pages.mia.inra.fr/bootcamp-neo4j-2022/

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 2 - Forks: 0

metexplore/tools/degradation-products-search

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

gafl/pipelines_snakemake/check_sequencing

Check fastq files for md5 and number of lines between fastq1 and fastq2

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

dipso/eosc-pillar/dataverse-vitam-archiving

Archiving packages generation and export from Dataverse to Vitam platform.

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

pole-migrateurs/modeles/quarto-extension

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

inter_cati_omics/web/wiki

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

PO2-Tools/po2manager

Last synced at: 5 months ago - Stars: 1 - Forks: 0

pole-migrateurs/bibliometrics4hal

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

sk8/sk8-apps/ijpb/rflomics

L'application rflomics est un package R couplé à une interface shiny permettant la gestion, l'analyse et l'intégration statistique de plusieurs jeux et types de données -omics: RNAseq, proteomics et metabolomics (pour le moment). Lien vers l'application : https://rflomics.sk8.inrae.fr

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

sk8/sk8-apps/agroecosystem/absys/agroforestreeadvice

AgroforesTreeAdvice est un comparateur d’avis sur les essences d’arbres à planter en agroforesterie: il regroupe, sous une interface unique et multilingue, plusieurs outils de sélection d'arbres (espèces, variétés, porte-greffes) développés dans plusieurs pays. https://agroforestreeadvice.sk8.inrae.fr

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0