forgemia.inra.fr
genotoul-bioinfo/metagwgs
metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.
Last synced at: 6 months ago - Stars: 9 - Forks: 2
urgi-is/faidare
FAIDARE: FAIR Data-finder for Agronomic Research It provides web services (based on the [BrAPI standard](https://brapi.org)) and a web interface with easy to use filters to facilitates the access to plant datasets from a federation of sources.
Last synced at: 6 months ago - Stars: 5 - Forks: 0
urgi-is/data-discovery
DataDiscovery aims at providing researchers a simple and fast access to relevant biological data using specific keywords and easy to use filters. This tool is expected to be easily customizable for specific filters, environments, or data schemas.
Last synced at: 6 months ago - Stars: 4 - Forks: 0
genotoul-bioinfo/tSNPannot
The software enable to retrieve information (exon boundaries, mutation effect, known SNP...) about transcribed SNP. It's based on ensembl API.
Last synced at: 6 months ago - Stars: 0 - Forks: 0
genotoul-bioinfo/pyrocleaner
The pyrocleaner is intended to clean the reads included in the sff file in order to ease the assembly process.
Last synced at: 6 months ago - Stars: 0 - Forks: 0
caf-forge/cafe-forge
Le camp de base du Café Forge
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 2 - Forks: 0
genotoul-bioinfo/mixKernel
mixKernel is a multiple kernel framework that allows to integrate multiple datasets of various types into a single analysis. The package is published on CRAN: https://cran.r-project.org/package=mixKernel
Last synced at: 6 months ago - Stars: 1 - Forks: 0
metexplore/cbm/samba-project/samba
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
sunrise/inference_methods
Code to reproduce the results of "Gene regulatory network inference methodology for genomic and transcriptomic data acquired in genetically related heterozygote individuals", https://doi.org/10.1093/bioinformatics/btac445
Last synced at: 6 months ago - Stars: 0 - Forks: 0
urgi-is/rare-basket
Project related to the development of a basket for RARe portal (https://urgi.versailles.inrae.fr/rare).
Last synced at: 6 months ago - Stars: 0 - Forks: 0
in-sylva-development/in-sylva.information-system
This project is the entrypoint for an Information System dedicated to manage a forest experimentation metadata catalog. It relies on a metadata standard available at URL https://data.inrae.fr/dataset.xhtml?persistentId=doi:10.15454/ELXRGY.
Last synced at: 6 months ago - Stars: 0 - Forks: 0
migale/affiliationexplorer
Shiny app for exploration and disambiguation of FROGS multi-affiliation
Last synced at: 6 months ago - Stars: 0 - Forks: 0
urgi-anagen/event_caulifinder
Caulifinder : a pipeline for automatic detection and annotation of caulimovirid endogenous viral elements in plant genomes
Last synced at: 6 months ago - Stars: 0 - Forks: 0
abisoft-gqe/shinemas
SHiNeMaS is a database with its web interface, dedicated to the management of the history of seed lots and related data like phenotyping, environment and cultural practices. SHiNeMaS is freely available under GNU Affero GPL Licence
Last synced at: 6 months ago - Stars: 1 - Forks: 0
umr-gdec/bwgs
Package for BreedWheat Genomic Selection pipeline
Last synced at: 6 months ago - Stars: 0 - Forks: 0