forgemia.inra.fr | Ecosyste.ms: Repos

A short tutorial on (1) fitting basic Weibull survival models in NIMBLE, and (2) two types of shrinkage prior (Dirichlet-Laplace & Horseshoe) for Bayesian variable selection. https://umr-astre.pages.mia.inra.fr/training/nimble-Weibull-Shrinkage

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

in-wop/couplage.seinebasin2.arteseine

Report and data on coupling the seinebasin2 model with the Telemac 2D "arteseine" model from Artelia

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umr-gdec/scripts_files

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singularity-mesolr/riverly-hybv-1.0.0

Projet HYBV pour l'unité RIVERLY de Lyon. Ce projet embarque GRASS, HRU-DELIN et JAMS

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urfm/sureau_utils

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plateformes-epidemiosurveillance/plateforme-esa/utilsESA

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nmf4metagenomics/pynmf

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gafl/pipelines_snakemake/wgs_gatk

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anaee-dev/si-ore-v2

# Projet de la version V2 de l'application des ORE. Le projet est constitué de 2 sous projet : - La partie serveur qui fournit les web services de l'application - La partie UI qui fournit une interface VueJS permettant d'interroger ces Web Service

Last synced at: 7 months ago - Stars: 3 - Forks: 0

pappso/libmass

*libmass* is a C++ static library that is referenced from other projects. The *libmass* static library is designed to enshrine the non-gui functionalities needed by the following two projects: * msXpertSuite/massXpert; * msXpertSuite/mineXpert2. *libmass* has a companion GUI library, *libmassgui* , that is designed to enshrine the GUI functionalities needed by the same two projects above.

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

svdetection/popsim

Generate a population of individuals with SV, with paried end reads for each

Last synced at: 5 months ago - Stars: 0 - Forks: 0

sk8/sk8-apps/miat/mastics/mastics-tp3

https://mastics-tp3.sk8.inrae.fr TP du module 3 de la formation MASTICS https://elearning.formation-permanente.inrae.fr/course/view.php?id=419&section=0

Last synced at: 7 months ago - Stars: 0 - Forks: 0

sk8/sk8-apps/miat/mastics/mastics-tp-8-1

TP 1 du module 8 de la formation MASTICS https://elearning.formation-permanente.inrae.fr/mod/url/view.php?id=9206 Lien vers l'application : https://mastics-tp-8-1.sk8.inrae.fr

Last synced at: 7 months ago - Stars: 0 - Forks: 0

sk8/sk8-apps/catis/baric/test/shinybaric-la-rochelle

Premier test d'application Shiny fait durant la formation BARIC La Rochelle réalisée par Joseph Tran et Amandine Velt Lien vers l'application : https://shinybaric-la-rochelle.sk8.inrae.fr

Last synced at: 7 months ago - Stars: 0 - Forks: 0

sk8/sk8-apps/tbi/explore-metabar

ExploreMetabar is a shiny application used to explore metabarcoding data (16S, ITS) with interactive plots, integrated statistical tests, and differential analysis. https://explore-metabar.sk8.inrae.fr

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

sk8/sk8-apps/miat/atcha/mf-12-1-ha

Exploration interactive de scenario de simulation du modèle MF1.2-1ha du projet Atcha. [https://mf-12-1-ha.sk8.inrae.fr/](https://mf-12-1-ha.sk8.inrae.fr/) | https://shiny.sk8.inrae.fr/app/atcha-mf-12-1-ha | https://shiny.sk8.inrae.fr/app_direct/atcha-mf-12-1-ha

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sk8/sk8-apps/sk8-demo

L'application template de base. * simple : [https://sk8-demo.sk8.inrae.fr](https://sk8-demo.sk8.inrae.fr) * catalogue : [https://shiny.sk8.inrae.fr/app/sk8-demo](https://shiny.sk8.inrae.fr/app/sk8-demo)

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gafl/users/alexandre_hereil/fruits_institut_pasteur

Last synced at: 7 months ago - Stars: 0 - Forks: 0

gafl/users/alexandre_hereil/projet_racine_champs

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gafl/pipelines_snakemake/easy_qtlseq

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forge-inrae/www

Site web décrivant l'avancée du projet Forge INRAE. Accessible à cette URL : <https://forge-inrae.pages.mia.inra.fr/www/>

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sk8/sk8-apps/ara/riverly/crues-r

A shiny application that make time series events selection and modification simpler. Lien vers l'application : https://crues-r.sk8.inrae.fr

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pappso/beads

"beads" (billes en Français) est un logiciel de détection et de quantification de spots sur des images de gels d'électrophorèse bidimensionnelle.

Last synced at: 6 months ago - Stars: 0 - Forks: 0

pappso/libodsstream

Lightweight C++ and Java library to produce Open Document Spreadsheet (.ods) files. The main goal is to write data as simply as writing it to a simple text file (csv or tsv). Libodsstream allows yout to read and write ODS files as stream

Last synced at: 5 months ago - Stars: 0 - Forks: 0

xamarin/formationxamarin2022

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formationcalcul2023/formation-singularity

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singularity-mesolr/palmv22.04-mpi4.1.3

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singularity-mesolr/claire-lauvernet-r-mkl-4.0.4

Claire Lauvernet, container R mkl en 4.0.4

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singularity-mesolr/peshmelba-singularity-mpichv-3-1-4

Peshmelba mpichv 3.1.4 for Poldif team

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singularity-mesolr/nathalie-folton-r-3-6-3

Projet pour Nathalie Folton d'aix En provence UMR RECOVER - 11/03/2022

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dad/dad

R package dad

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drone/HDRP_PGoCF

The goal of this generator is to produce synthetic data of aerial images of crop fields as they would be captured by an Unmanned Aerial Vehicle (UAV).

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anaee-dev/oboe

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pepi-atelier-singularity/atelier-singularity

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genotoul-bioinfo/tips-for-sustainable-computing

Provide tips to the platform users to use less resources.

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baric/shiny-tutorial

Learn how to build a shiny application

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bioger/ateliers_bioinfo

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scales/replication-chrocodiff

Replication repository for the article "A comprehensive review and benchmark of differential analysis tools for Hi-C data"

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urgi-is/data-brokering

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adminforgemia/pages

![Favicon](https://forgemia.inra.fr/uploads/-/system/project/avatar/7051/pages.png?width=192)

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lisc/sonar-web

Site web du projet SONAR (Synthèse des dOnnées bioéconomiques et iNdicateurs trAnsitions des territoires uRbains) du métaprogramme BETTER https://better.hub.inrae.fr/

Last synced at: 7 months ago - Stars: 0 - Forks: 1

lisc/dapp

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lisc/boundary-confidence

Implementation of the bounded confidence model (opinion dynamics) available on http://jasss.soc.surrey.ac.uk/19/1/6.html

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lisc/leviathan

https://lisc.pages.mia.inra.fr/leviathan/ Leviathan is an opinion dynamics model that combines processes of vanity and opinion propagation.

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adonis/Adonis_Webapp

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agriterix/farm-generator

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mathscell/elastosphere

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mathscell/gmresls

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mathscell/csvweditor

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formationcalcul2022/formation-git

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formationcalcul2022/formation-slurm

Formation et tp SLURM pour la FCC 2022 à Montpellier

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formationcalcul2022/formation-singularity

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lisc/prima

Prima Regional Model developped during the [UE project PRIMA (2008-2011)](http://prima.cemagref.fr/). This code has been produced by Sylvie Huet and Nicolas Dumoulin.

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inca-hsmm/gitlab-profile

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omnicrobe/omnicrobe_web

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omnicrobe/omnicrobe-database

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stacomi/stacomi_db

Scripts related with database development in stacomi.

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stacomi/stacomir

Fish migration monitoring, database connection and treatment

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

genotoul-bioinfo/use-nextflow-nfcore-course

Cours accessible à https://genotoul-bioinfo.pages.mia.inra.fr/use-nextflow-nfcore-course/

Last synced at: 5 months ago - Stars: 4 - Forks: 1

omnicrobe/text-mining-workflow

Last synced at: 5 months ago - Stars: 2 - Forks: 1

seqoccin/axis3-metagenomics-amplicon

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canular/canular-website

Les pages du site CANULAR générées avec HUGO

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les-patates-douces/les-patates-douces

Site web pour les patates douces de l'INRAE

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urgi-anagen/panTEannot

panTEannot serially annotates transposable elements from multiple genomes using a common reference library. The annotation is a light version of TEannot from REPET package. These annotations can be used as input for the panREPET tool.

Last synced at: 7 months ago - Stars: 2 - Forks: 0

exploratory-penalized-regression/biometrics_practice

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hackathon-portail-calcul/hackathon_organisation

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hackathon-portail-calcul/existant

PCS (Portail Calcul Scientfique) - Ingenum

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umr-tetis/stac/extensions/generic-metadata

Create STAC extensions for generic metadata with pydantic models

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pepragrodiv/pangenome/pansel_paper

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reversaal/nature-based-solutions/caribsan/wetlandoptimizer

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pole-migrateurs/eda/dbeel

dbeel integration

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bsv/phenologicalstages

part of the ANR D2KAB project, this repository is dedicated to the construction of semantic resources (RDF dataset and OWL ontologies) that will represent plant phenological development stages for agricultural practices.

Last synced at: 7 months ago - Stars: 0 - Forks: 0

bsv/frenchcropusage

FrenchCropUsage is a thesaurus of types of crops, organized according to their destination (direct human food, animal feed, food industry, etc) and the type of culture system (field crop, market gardening, etc.).

Last synced at: 7 months ago - Stars: 0 - Forks: 0