forgemia.inra.fr
umr-astre/mapMCDA
Produce an epidemiological risk map by weighting multiple risk factors. https://umr-astre.pages.mia.inra.fr/mapMCDA/
Last synced at: 6 months ago - Stars: 0 - Forks: 0
dipso/tsv2properties
Génération de fichiers .properties de traduction pour Dataverse à partir de fichiers de métadonnées .tsv"
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
dipso/eosc-pillar/dataverse-jupyterhub-connector
Connecteur entre dataverse et jupyterhub
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
dipso/hal-inrae/export-hal-inrae
Ce outil permet de réaliser l'export des publications présentes dans HAL pour les évaluations CSS des chercheurs.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
dipso/thesaurus-inrae
Exploitation et maintenance du thésaurus INRAE, thésaurus ouvert et partagé couvrant les domaines de recherche d’INRAE. Il sert de référentiel au sein de l’institut pour indexer et annoter des documents, pages web, descriptions d’activités, jeux de d
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 3 - Forks: 1
cassiopee-projects/loi-de-seuil-triangulaire-tronque
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
dipso/onyxia1-helm-charts-interactive-services
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metabohub/web-components/mth-forum-lib
FORUM is an open knowledge network aiming at supporting metabolomics results interpretation in biomedical sciences and automated reasoning. Containing more than 8 billion statements, it federate data from several life-science resources such as PubMed, ChEBI and PubChem. Leveraging the bridges in this linked dataset, we automatically extract associations between compound and biomedical concepts, using literature metadata enrichment.
Last synced at: 7 months ago - Stars: 0 - Forks: 0
sk8/sk8-apps/miat/mastics/mastics-tp-5
TP du module 5 de la formation MASTICS https://elearning.formation-permanente.inrae.fr/mod/quiz/view.php?id=9428 Lien vers l'application : https://mastics-tp-5.sk8.inrae.fr
Last synced at: 7 months ago - Stars: 0 - Forks: 0
sk8/sk8-apps/miat/mastics/mastics-tp-4
TP du module 4 de la formation MASTICS https://elearning.formation-permanente.inrae.fr/mod/url/view.php?id=9054 Lien vers l'application : https://mastics-tp-4.sk8.inrae.fr
Last synced at: 7 months ago - Stars: 0 - Forks: 0
sk8/sk8-apps/miat/mastics/mastics-tp-8-2
TP 2 du module 8 de la formation MASTICS https://elearning.formation-permanente.inrae.fr/mod/url/view.php?id=9208 Lien vers l'application : https://mastics-tp-8-2.sk8.inrae.fr
Last synced at: 7 months ago - Stars: 0 - Forks: 0
sk8/sk8-apps/phacc/bilhn-app
This package is a Rshiny implementation of the BilHN crop model designed at INRAE, a decision-support tool developed at the Auzeville Experimental Unit. It is a crop model with daily time steps which allows to establish a diagnosis of water and nitrogen resources available to plants as a function of soil and climatic conditions and technical interventions. https://bilhn-app.sk8.inrae.fr
Last synced at: 7 months ago - Stars: 0 - Forks: 0
sk8/sk8-apps/ihap/epidesa/first-inf
L'application permet, à partir de données de mortalité en élevage de volailles rentrées par l'utilisateur, de calculer les dates les plus probables de la première infection par un virus influenza aviaire hautement pathogène. L'application est basée sur un modèle épidémiologique classique de type SEIR, et l'estimation de la date de la première infection utilise un algorithme d'Approximate Bayesian Computation. Lien d'accès à l'application https://first-inf.sk8.inrae.fr
Last synced at: 7 months ago - Stars: 0 - Forks: 0
sk8/sk8-apps/catis/baric/test/baric-2024
test dans le cadre de l'atelier Rshiny du cati baric Lien vers l'application : https://baric-2024.sk8.inrae.fr
Last synced at: 7 months ago - Stars: 0 - Forks: 0
sk8/sk8-apps/agroecosystem/agronomie/oad-deciduous
https://oad-deciduous.sk8.inrae.fr
Last synced at: 7 months ago - Stars: 0 - Forks: 0
sk8/sk8-apps/ecosocio/odr/sequences-rpg
https://sequences-rpg.sk8.inrae.fr
Last synced at: 7 months ago - Stars: 0 - Forks: 0
sk8/sk8-apps/miat/chromatin-design
Re-design Chip-SEQ curves to design chromatin - Demo application of functionalities. (https://chromatin-design.sk8.inrae.fr)
Last synced at: 7 months ago - Stars: 0 - Forks: 0
urep/dev_utils/r_utils/r4urep
An R package with globally useful function for UREP R developments
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
gafl/users/marie_serrie/serrie_gwas_biotic_stress_prunus_2024
Last synced at: 7 months ago - Stars: 0 - Forks: 0
gafl/users/javier_belinchon/nanopore-adaptive-sampling-for-melon-nlrome
Last synced at: 7 months ago - Stars: 0 - Forks: 0
umr-g-eau/sweep
sweep - Spatial Weather and Environmental datas Extraction Package The sweep package aims to facilitate the extraction of environmental data from various cartographic or spatial sources or APIs. It allows for the retrieval of this information using specific coordinates or spatial grids. This package also formats the extracted data in a way that makes it easily exploitable for further analysis.
Last synced at: 7 months ago - Stars: 0 - Forks: 0
umr-g-eau/fairify
R-package proposing a framework to apply FAIR principles based on reports created using the bookdown R-package and published as a website (e.g. gitlab pages) and data located on a owncloud/nextcloud server
Last synced at: 7 months ago - Stars: 0 - Forks: 0
umr-g-eau/latex_models
Mes modèles de documents latex pour les rapports institutionnels et autres
Last synced at: 7 months ago - Stars: 0 - Forks: 0
chip-gt/antipoaching
Implementation of the Anti-Poaching game, a grid-world game between cooperative rangers and independent poachers.
Last synced at: 7 months ago - Stars: 0 - Forks: 0
subtilnet/DeepSEM
A fork of Deep learning VAE DeepSEM from https://github.com/HantaoShu/DeepSEM.git at 18/03/2024. The idea here is to change the code to be able to extract the models and make goodness of fit with predicted expression
Last synced at: 7 months ago - Stars: 0 - Forks: 0
subtilnet/arboreto
A fork of GRNBoost2 arboreto from https://github.com/aertslab/arboreto.git at 11/03/2024. The idea here is to change the code to be able to extract the models and make goodness of fit with predicted expression.
Last synced at: 7 months ago - Stars: 0 - Forks: 0
formations-statistique/statswithr
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
codev4graph/codev4graph-libraries/codev4graph-parsers
Last synced at: 7 months ago - Stars: 0 - Forks: 0
codev4graph/codev4graph-tools/vng-2-json-graph
Allows converting graph data in the v-network-graph format into JSON Graph format (extended) one.
Last synced at: 7 months ago - Stars: 0 - Forks: 0
bios4biol/training-aln-variant-calling
https://bios4biol.pages.mia.inra.fr/training-aln-variant-calling
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
elisemaigne/slides/surapprentissage
https://elisemaigne.pages.mia.inra.fr/slides/surapprentissage/
Last synced at: 7 months ago - Stars: 0 - Forks: 0
bios4biol/Help4MultiQC
https://bios4biol.pages.mia.inra.fr/Help4MultiQC
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 1
dynamo/software/emulsion-public
Public release of the EMULSION framework for multi-level epidemiological modelling
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
elisemaigne/slides/presentation_sk8_rr2024
Lien vers les slides : https://nextcloud.inrae.fr/s/xs4EZtCo4JpryNg
Last synced at: 7 months ago - Stars: 0 - Forks: 0
metagenopolis/guildomics
Intern development of the methods for microbial guild inference and clustering
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metagenopolis/trim_fastq
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
inter_cati_omics/hackathon_inter_cati_decembre_2022/atelier_2_integration_de_donnees/eval_data_integration_tools
L’objectif de l’atelier est d’intégrer et d’analyser des données omiques hétérogènes via des approches statistiques notamment disponibles dans les packages R (MixOmics, iClusterPlus, MOFA2).
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
inter_cati_omics/hackathon_octobre2021/django-rest-api
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
eabx-public/collec-science
Gestion des collections d'échantillon - management of samples collections
Last synced at: 7 months ago - Stars: 0 - Forks: 0
irhs-bioinfo/sub-chromomal-dominance-purged
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
biocom/biocom-pipe-in-docker
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
elisemaigne/formation-shiny
Supports pour la formation shiny - Plateforme de Biostatistique – Génopole Toulouse Midi-Pyrénées
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
elisemaigne/2022_datatable
Formation sur le package R data.table
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1
elisemaigne/formation_shiny
Supports pour la formation shiny - Plateforme de Biostatistique – Génopole Toulouse Midi-Pyrénées
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 1
elisemaigne/2021_git
Présentation de git et de son écosystème dans le cadre des rencontres ingénieurs statisticiens de Toulouse (dec. 2021).
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 2 - Forks: 2
git-gitlab-paca/support-de-formation
[Présentation en ligne sur GitLab Pages](https://git-gitlab-paca.pages.mia.inra.fr/support-de-formation/)
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 26 - Forks: 4
inter_cati_omics/hackathon_inter_cati_decembre_2022/Atelier_1_Snakemake_Singularity_Pangenome/containers/minigraph
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
beyond/Snetoolkit
Absolute Spatial Named Entities extraction and disambiguation tool
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
beyond/remote_sensing_notebooks
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 2 - Forks: 0
inter_cati_omics/hackathon_inter_cati_decembre_2022/Atelier_1_Snakemake_Singularity_Pangenome/containers/samtools
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
inter_cati_omics/hackathon_inter_cati_decembre_2022/Atelier_1_Snakemake_Singularity_Pangenome/containers/gfaffix
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
inter_cati_omics/docker-galaxy-rstudio-data-integration
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1
eabx-public/sturwild
Record catch of sturgeons in a Postgresql database
Last synced at: 7 months ago - Stars: 0 - Forks: 0
bibliome/bionlp-st-py
BioNLP-ST format parser in Python
Last synced at: 6 months ago - Stars: 0 - Forks: 0
genepi/analyses/rosepigs
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
gqe-base/MiniRead
Hardware description and pieces of software for DIY MiniRead 96-well plate optical reader, designed to monitor growth kinetics of yeast (or bacterial) cells.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
gqe-base/careb
Simulation tool to investigate the Consequences of Altered Recombination on the Efficiency of Breeding
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
gqe-base/djabali-drought-plasticity-qtls-article1
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
inter_cati_omics/hackathon_inter_cati_decembre_2022/Atelier_1_Snakemake_Singularity_Pangenome/containers/vg
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
inter_cati_omics/hackathon_inter_cati_decembre_2022/Atelier_1_Snakemake_Singularity_Pangenome/containers/pggb
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bibliome/gene-regulation-network
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bibliome/re-bert
relation extraction with different types of BERT
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
geapsi/recp/org.psativum.eg.db
orgDB containing annotation for Pisum sativum genome v1 Kreplak, J., Madoui, MA., Cápal, P. et al. A reference genome for pea provides insight into legume genome evolution. Nat Genet 51, 1411–1422 (2019). https://doi.org/10.1038/s41588-019-0480-1
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
umr-gdec/nf-remapmarkers
scripts to remap markers as pairs of bait sequences or context sequences.
Last synced at: 7 months ago - Stars: 1 - Forks: 1
gqe-base/cayss
Cytometry Analysis of Yeast Spores Segregation Package for automatic analysis of flow cytometry data to measure meiotic recombination rate and crossover interference in regions delimited by fluorescent markers.
Last synced at: 7 months ago - Stars: 0 - Forks: 0
umr-gdec/clari-te
"clariTE.pl" is a program that post process the xm output file of RepeatMasker.
Last synced at: 6 months ago - Stars: 0 - Forks: 0
umr-gdec/magatt
Pipeline used to tranfert gene annotation (GFF3) between different versions of assemblies.
Last synced at: 5 months ago - Stars: 2 - Forks: 0
singularity/bioinfo/gatk4_v4.1.9.0
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
