forgemia.inra.fr | Ecosyste.ms: Repos

HIPL stands for heavy isotope protein labelling. It is basically a project where we use IsoSpecPy for simulating isotopic clusters of peptides that were labelled with 15N.

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cropmetapop/cmpfitness

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

Pipeline to analyze gene expression and organellar gene expression specificities (C-to-U RNA editing, splicing and processing) from RNAseq data. It conducts mapping-counting steps and differential analysis for gene expression, splicing and editing.

Last synced at: 6 months ago - Stars: 0 - Forks: 0

gafl/singularity/nanopack

Last synced at: 6 months ago - Stars: 0 - Forks: 0

gafl/singularity/dicoexpress

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epgv/nlgenomesweeper

search a genome for NBS-LRR (NLR) disease resistance genes based on the presence of the NB-ARC domain using the consensus sequence of the Pfam HMM profile (PF00931) and class specific consensus sequences built from Vitis vinifera. https://doi.org/10.

Last synced at: 6 months ago - Stars: 0 - Forks: 0

in-sylva-development/in-sylva.search

Search engine for IN-SYLVA Information System

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GNet/dicoexpress

Last synced at: 6 months ago - Stars: 1 - Forks: 3

pappso/groupingprotein

GroupingProtein does filtering, protein inference and grouping of mass MS/MS identification result (thousands of samples, high resolution mass spectrometers)

Last synced at: 6 months ago - Stars: 0 - Forks: 0

mychoice/public

MyChoice application's public repository

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pole-migrateurs/Acoustic/acoustic-v2

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

metexplore/websemantic/extraction-pipeline

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

seqoccin/GenomOrder

Nextflow GenomOrder pipeline

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

gqe-base/cnvmap

Linkage-based detection of copy-number variants from marker segregation data in mapping populations

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

urep/dev_utils/java_utils

Utility classes for java development

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urep/docs/formations/formation_r/initiation

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

agriterix/import-export

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

metexplore/gsam

compute Genome Scale Atom Mapping

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

metexplore/cbm/met4j-flux-obsolete

Obsolete. This modular version was not easy to manage. See packages in orgemia.inra.fr/metexplore/cbm/met4j-flux

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

umr-astre/training/data-management

Slideshow on good practices in data management. https://umr-astre.pages.mia.inra.fr/training/data-management/

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

agroclim/Indicators/indicators-java

Bibliothèque Java pour calculer des indicateurs agro- et éco-climatiques à partir de données climatiques journalières ou horaires et des donnés phénologiques. Un des modèles phénologiques peut être utilisé à la place des données phénologiques. ([Documentation en ligne](https://agroclim.pages.mia.inra.fr/Indicators/indicators-java))

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pepragrodiv/pangenome/pansel

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 3 - Forks: 0

optforests/oak-provenance-dendro

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

cassiopee-projects/cassiopeer

R package wrapping the jalhyd library

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rdg/entrepot/anr-projects

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rdg/rdg-portal-maintenance

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elisemaigne/slides/insee_package_renv

Présentation du package R renv https://elisemaigne.pages.mia.inra.fr/slides/insee_package_renv/presentation.html

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

metagenopolis/onenet

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

elisemaigne/slides/2021_git

Présentation de git et de son écosystème dans le cadre des rencontres ingénieurs statisticiens de Toulouse (dec. 2021). https://elisemaigne.pages.mia.inra.fr/slides/2021_git/#1

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

sk8/sk8-apps/lessem/loup-france-evolution

Cette application est une cartographie interactive de l'évolution de la présence du loup en France, à partir des données Carmen (répartition par mailles). https://loup-france-evolution.sk8.inrae.fr

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

holooligo/omnicrobe_web

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

genepi/analyses/rosepigs_stomach

RNAseq and EMseq analyses for the rosepigs project on stomach mucosa samples

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

dynamo/software/PASTE-public-release

PASTE (Platform for Automated Simulation and Tools in Epidemiology) is a software pipeline that produces a web architecture for a decision-support tool based on mechanistic epidemiological models (written with EMULSION)

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urep/models/modvege/modvege-r

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 2 - Forks: 0

biosp/static/perso

http://biosp.pages.mia.inra.fr/static/test/perso.html

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migale/ngs-pipeline-comparison

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ateliers_codons/test_git

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1

singularity/bioinfo/bamUtil2rm

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singularity/bioinfo/nudup_v2.3.3

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singularity/bioinfo/gatk_v4.1.4.1

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

sk8/sk8-apps/metexplore/champ

https://champ.sk8.inrae.fr CHaMP is an RShiny app that loads a list of compound masses from twin-peaks analysis, and build a mass difference network from which is extracted the connected component containing a mass of interest. It provides a network visualization of the sub-network that encompass potential metabolic and spontaneous reactions that leads to degradation/metabolization products.

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

4p/modules/phis-export-l2

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

metabohub/web-components/viz-mask

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metexplore/goliath/goliath-models

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

sk8/sk8-apps/miat/sombrero

Online version of the shiny application of the R package SOMbrero to performs Self Organizing Maps (https://sombrero.sk8.inrae.fr)

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

pappso/masschroq

MassChroQ (Mass Chromatogram Quantification) is a powerful and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from liquid chromatography-mass spectrometry techniques.

Last synced at: 6 months ago - Stars: 0 - Forks: 0

pappso/xtpcpp

X!TandemPipeline is a free software (GPL v3) that helps you to filter and group your peptide/protein identifications from MS/MS mass spectra. Publication: J. Proteome Res. 2017, 16, 2, 494–503 -- https://doi.org/10.102

Last synced at: 5 months ago - Stars: 1 - Forks: 0

cropmetapop/cropmetapop

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

infosol/sensor-map

ETL tool that transforms the result of SQL queries into json, xml or any other specific format

Last synced at: 6 months ago - Stars: 0 - Forks: 0

exploratory-penalized-regression/paper-script-and-data

Last synced at: 6 months ago - Stars: 0 - Forks: 0

metexplore/cbm/dexom-python

diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library github mirror: https://github.com/MetExplore/dexom-python

Last synced at: 6 months ago - Stars: 0 - Forks: 0

urep/soere-pp/meteosolApp

Shiny app to manage data from Bio Meteorological stations

Last synced at: 6 months ago - Stars: 0 - Forks: 0

irhs-bioinfo/bisepsgui

Electron Desktop App For Bisulfite Sequencing Processing Software (BiSePS)

Last synced at: 6 months ago - Stars: 2 - Forks: 0

infosol/ejp-cookbook

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irhs-bioinfo/i-fungi

Appli web d'identification de champignons microscopiques.

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eq-record/record-team

A static [web site](https://eq-record.pages.mia.inra.fr/record-team/) to present the team

Last synced at: 6 months ago - Stars: 2 - Forks: 3

umr-1202-biogeco/how-to-reproductibility

Documentation to help reproductibility of (bio-)informatics project: - organisation - markdown reports - introduction to git

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couplimspec/couplimspec

Version de référence Reference version

Last synced at: 6 months ago - Stars: 0 - Forks: 0

biocom/biocom-pipe

A new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S, 23S rRNA genes amplicons DOI: 10.5281/zenodo.3678129

Last synced at: 6 months ago - Stars: 0 - Forks: 0

pappso/repository-massxpert

Repository for the massXpert packages

Last synced at: 6 months ago - Stars: 0 - Forks: 0

pappso/repository-minexpert2

Repository for the mineXpert2 packages

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agriterix/simulator

Last synced at: 6 months ago - Stars: 1 - Forks: 0

migale/service-analyse-text-mining

Last synced at: 6 months ago - Stars: 0 - Forks: 0

agriterix/abc-ages

Model of the dynamics of population for French farmers that includes two processes, an installation process and a retirement process. Model calibrated by ABC.

Last synced at: 6 months ago - Stars: 0 - Forks: 0

gaev/usecases/jupyterhub-ubuntu-vbox

Creation and provisioning a virtual machine (Ubuntu/VirtualBox) containing The Littlest JupyerHub (TLJH)

Last synced at: 6 months ago - Stars: 0 - Forks: 0

get-nextflow-ngl-bi/template-nf

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rdg/entrepot/datapapers/enquete-datapapers

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

inter_cati_omics/hackathon_snakemake_singularity_calling

Singularity receipe for calling software stack used in snakemake short tutorial

Last synced at: 6 months ago - Stars: 0 - Forks: 0

inter_cati_omics/hackathon_snakemake_singularity_mapping

Singularity receipe for mapping software stack used in snakemake short tutorial

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infosol/talks

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inter_cati_omics/reproductibility

Example GitBook site using GitLab Pages: https://pages.gitlab.io/gitbook

Last synced at: 6 months ago - Stars: 1 - Forks: 1

inter_cati_omics/hackathon_shiny_2020

Atelier développement d’une application interactive Shiny lors du hackathon inter-CATI omics 2020

Last synced at: 6 months ago - Stars: 1 - Forks: 0

gaev/usecases/windowsr

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gaev/packer/windows10

Configurations et scripts pour la création d'une MV sous windows via Packer

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ijpb-bioinfo-dev/test_docker

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

sk8/sk8-apps/dsi/bedloadweb

bedloadweb.sk8.inrae.fr

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ateliers_codons/repo_remote

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

sk8/sk8-apps/ara/riverly/makaho

MAKAHO (pour MAnn-Kendall Analysis of Hydrological Observations) est un système de visualisation cartographique interactif permettant d’examiner les tendances présentes dans les données des stations hydrométriques aux débits peu influencés par les actions humaines. Le test de Mann-Kendall permet d’analyser la significativité des tendances de variables hydrologiques sur les différentes composantes du régime des cours d'eau (étiages, moyennes-eaux, crues), à mettre ensuite en relation avec les impacts du changement climatique sur l’hydrologie de surface. https://makaho.sk8.inrae.fr

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

mathnum/mathinfo

Archives HTML du site Drupal 9 : https://mathnum.pages.mia.inra.fr/mathinfo/

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0