gitlab.mbb.cnrs.fr / edna / exploitation
edna/exploitation/primer_design
How to design a primer ?
Last synced at: 7 months ago - Stars: 0 - Forks: 0
edna/exploitation/primers_specificity_mismatchplot
Visualization of the specificity of designed primers with mismatch plot
Last synced at: 7 months ago - Stars: 0 - Forks: 0
edna/exploitation/edna_intra_pipeline_comparison
This project aims to compare twelve bioinformatics pipelines based on five existing metabarcoding programs to make recommendations for data management in intraspecific variability studies using environmental DNA.
Last synced at: 7 months ago - Stars: 0 - Forks: 0
edna/exploitation/primer_specificity_ecopcr
This project permits to check the specificity of already designed primers.
Last synced at: 7 months ago - Stars: 0 - Forks: 0
edna/exploitation/dada2_and_obitools
This project has for goal to filtrate efficiently eDNA sequences after PCR amplification and NGS, in order to eliminate the false sequences generated by these technologies.
Last synced at: 7 months ago - Stars: 0 - Forks: 0
edna/exploitation/beginning_obitools
The first step to begin with obitools and Bash
Last synced at: 7 months ago - Stars: 0 - Forks: 0
edna/exploitation/swarm_and_obitools
This project is based on the idea that gathering similar sequences allows to faithfully study them by eliminating sequences generated from PCR or NGS errors.
Last synced at: 7 months ago - Stars: 0 - Forks: 0
edna/exploitation/only_obitools
This project presents a pipeline based on OBITools commands in order to eliminate sequences interpreted as coming from PCR errors and to assign each remaining sequence to a taxon thanks to a reference database.
Last synced at: 7 months ago - Stars: 0 - Forks: 0