gitlab.pasteur.fr / iah-public 13 Repositories
The public-visibility projects of the Image Analysis Hub of the Institut Pasteur. https://research.pasteur.fr/en/team/image-analysis-hub/
iah-public/localzprojector
Local z-projection via the determination of a plane of reference.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
iah-public/20241008_remote_python_bioimage_analysis_course_day2
Remote bio-image analysis course with python. Website: https://iah-public.pages.pasteur.fr/20241008_remote_python_bioimage_analysis_course_day2
Last synced at: 7 months ago - Stars: 0 - Forks: 0
iah-public/2d-frames-registration-with-bunwarpj
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
iah-public/ltravier_brain-ventricles-volume-measurement
Last synced at: 7 months ago - Stars: 0 - Forks: 0
iah-public/clostridioides-difficile-binary-toxin-cdt-induces-biofilm-like-persisting-microcolonies
Python code for the image analysis performed for the paper "Clostridioides difficile binary toxin CDT induces biofilm-like persisting microcolonies" J. MEZA TORRES et al.
Last synced at: 7 months ago - Stars: 0 - Forks: 0
iah-public/DeProj
Deprojection of a 2D segmentation onto a 2.5D mesh
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 1
iah-public/automated_segmentation_mycobacterium_tuberculosis_snapshots
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
iah-public/TrackingPerformance
Tools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics. I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
iah-public/hpyloridegradosomeanalysis
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
iah-public/ptrmiad-thomaidou
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
iah-public/nuclei-identification-in-cells-infected-by-chlamydia
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
iah-public/invert-transform-bunwarpj
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
iah-public/CellContactAnalyzer
A Fiji tool to detect, track and analyze cell-to-cell contacts. First reported in Samassa et al., 2020, "Shigella impairs human T lymphocyte responsiveness by hijacking actin cytoskeleton dynamics and TCR vesicular trafficking"
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
