gitlab.pasteur.fr / statistical-genetics 13 Repositories
statistical-genetics/manocca
MANOCCA test is based on covariance. This project implements MANOCCA, MANOVA and provides an simulation environment and an explainer.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
statistical-genetics/jass_suite_pipeline
A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute: - clean and harmonize data with jass_preprocessing - if specified impute data with RAISS - create input data for JASS - analyse group of trait with jass
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1
statistical-genetics/jass_preprocessing
Script to pre-process GWAS inputs
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
statistical-genetics/raiss
A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
statistical-genetics/jass
A web interface for the Joint Analysis of GWAS Summary Statistics.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 1
statistical-genetics/multitrait_power_traitselection
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statistical-genetics/gs_project_template
A cookie cutter for the genetic statistics unit
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statistical-genetics/j2s
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
statistical-genetics/runCMS
Pipeline to run CMS in large-scale analyses
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1
statistical-genetics/PaintorPrep
scripts to prepare gwas data for using PAINTOR (https://github.com/gkichaev/PAINTOR_V3.0)
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
statistical-genetics/VarExp
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
statistical-genetics/hgcovid_imputation
Simulation study to determine the impact of summary statistic imputation on a meta-analysis
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0