gitlab.univ-nantes.fr / bird_pipeline_registry 15 Repositories
Gestion des pipelines de BiRD : catalogue, statut, reproductibilité.
bird_pipeline_registry/magneto
An Automated Workflow for Genome-Resolved Metagenomics.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1
bird_pipeline_registry/srp-pipeline
Snakemake for 3' Sequencing RNA Profiling analysis. https://bio.tools/3SRP
Last synced at: 7 months ago - Stars: 7 - Forks: 0
bird_pipeline_registry/cplex-conda-recipes
Conda build recipes
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bird_pipeline_registry/f2c2py
F2C2py: Fast Flux Coupling Calculator in python
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bird_pipeline_registry/RNAseq_quantif_pipeline
RNAseq pipeline for gene expression quantification.
Last synced at: 7 months ago - Stars: 3 - Forks: 3
bird_pipeline_registry/sra
SRA-tools pipeline to download fastq files from sra
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bird_pipeline_registry/html-tools-catalog
Automatically build an HTML page from Bio.Tools entries.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bird_pipeline_registry/pretty-pipeline-procedure
Good practices procedures in pipeline creation, managment, distribution and support.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
bird_pipeline_registry/biobakery_snakemake
Workflow designed to use biobakery tools for functional and taxonomic profiling of shotgun metagenomic data.
Last synced at: 7 months ago - Stars: 0 - Forks: 0
bird_pipeline_registry/atac-pipeline
ATACseq pipeline
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 1
bird_pipeline_registry/microsysmics-utils
Toolbox for secondary analysis after using MicroSysMics https://gitlab.univ-nantes.fr/bird_pipeline_registry/microSysMics
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1
bird_pipeline_registry/microSysMics
Microbiome analysis
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 1
bird_pipeline_registry/stoichiomatrices
Stoichiometric matrices used for testing flux coupling and flux correlation methods.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bird_pipeline_registry/chebi_species
Get ChEBI ids present in given specie(s). Those scripts were developed during the Hackathon MoDaL Biogenouest 2021 https://biogenouest.github.io/biogen-hack-2020/M2A.html
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bird_pipeline_registry/exome-pipeline
Pipeline for exome sequencing with snakemake (BWA->HaplotypeCaller->VEP+GnomAD)
Last synced at: 7 months ago - Stars: 0 - Forks: 1