Package Usage: pypi: biopython
Freely available tools for computational molecular biology.
61 versions
Latest release: environ 2 ans ago
833 dependent packages
2 020 442 downloads last month
View more package details: https://packages.ecosystem.code.gouv.fr/registries/pypi.org/packages/biopython
Dependent Repos 33
diade/iKISS
Inference of significant kmers under selectionLast synced: plus d'un an ago - Pushed: plus d'un an ago
diade/culebront_pipeline
dojo snakemake assemblage long readsLast synced: plus d'un an ago - Pushed: plus d'un an ago
tru/alphafold-dialvarezs
https://github.com/dialvarezs/alphafoldLast synced: presque 2 ans ago - Pushed: plus d'un an ago
frousset/ecocg
The impact of genetic diversity on gene essentiality within the E. coli speciesLast synced: presque 2 ans ago - Pushed: plus d'un an ago
ippidb/ippidb-web
iPPI-DB - django applicationLast synced: plus d'un an ago - Pushed: plus d'un an ago
rivals/dipwmsearch
This package provides efficient functions to search for one kind of probabilistic motifs known as di-nucleotidic Position Weight Matrices (di-PWMs) in a genomic sequence. The genomic sequence may contain positions with non-ATGC symbols, encoded with IUPAC.Last synced: presque 2 ans ago - Pushed: plus d'un an ago
genotoul-bioinfo/dgenies
Dotplot large Genomes in an Interactive, Efficient and Simple waySize: 19,7 Mo - Last synced: 2 jours ago - Pushed: 3 jours ago
tru/alphafold-github
Open source code for AlphaFold.Last synced: presque 2 ans ago - Pushed: plus d'un an ago
dbikard/crisprbact
Tools to design and analyse CRISPRi experiments [](https://badge.fury.io/py/crisprbact)Last synced: presque 2 ans ago - Pushed: plus d'un an ago
dbikard/ecocg
The impact of genetic diversity on gene essentiality within the E. coli speciesLast synced: presque 2 ans ago - Pushed: plus d'un an ago
etalab-ia/pseudonymisation_decisions_ce 📦
Temporary repo to split the pseudo livrableSize: 25,8 Mo - Last synced: 5 jours ago - Pushed: presque 6 ans ago
phim/sravel/RattleSNP
snakemake workflow for mappind single/paired datasLast synced: plus d'un an ago
phim/sravel/PodiumASM
Long-read sequencing is a highly accurate approach that can be used to challenging genomes, such as those containing stretches of highly repetitive elements and lot of structural variant. Long read sequencing can also be used to generate de novo assembly and genome finishing applications Lot of tools are used to make genome assembly with long reads every day and sometimes you don't know wich Assembler tool is the best for your organism. PodiumASM is here for you ! PodiumASM is is an open-source, scalable, modulable and traceable snakemake pipeline, able to compare multiple long read assemblies obtained from multiple assemblers tools. The workflow PodiumASM can help you to choose the best assemblies among all possibilities.Last synced: plus d'un an ago
edna/custom_reference_database
scripts to create our own reference database with our own sequences only and using the NCBI taxonomyLast synced: plus d'un an ago
edna/custom_reference_database
scripts to create our own reference database with our own sequences only and using the NCBI taxonomyLast synced: plus d'un an ago
capsid.public_codes/CroMaSt
CroMaSt (Cross Mapper of domain Structural instances) is an automated, iterative workflow to clarify domain definition by cross-mapping domain structural instances between domain databases.Last synced: plus d'un an ago
GruLab/s-gcn
The project contains Spherical Graph Convolutional Network (S-GCN) that processes 3D models of proteins represented as molecular graphs.Last synced: plus d'un an ago
cedar/connection-studio
ConnectionStudio integrates highly heterogeneous data into graphs, enriched with extracted entities. Studio users can discover the entities in their data, navigate across connections between datasets, explore and query the data in many ways. The Studio currently supports: CSV, JSON, XML, RDF, text, property graphs, all Office formats, and PDF datasets. For more information, see: https://connectionstudio.inria.fr The scientific publications behind the platform: https://team.inria.fr/cedar/connectionlens/Last synced: plus d'un an ago
