Package Usage: pypi: pysam
Package for reading, manipulating, and writing genomic data
52 versions
Latest release: about 1 year ago
370 dependent packages
576,243 downloads last month
View more package details: https://packages.ecosystem.code.gouv.fr/registries/pypi.org/packages/pysam
Dependent Repos 12
diade/culebront_pipeline
dojo snakemake assemblage long readsLast synced: 7 months ago - Pushed: 11 months ago
bli/libreads
Utilities to make stats and plots from reads.Last synced: 12 months ago - Pushed: 11 months ago
bneron/craw
Compute RNA expression around a reference positionLast synced: 12 months ago - Pushed: 11 months ago
bli/bam25prime
Utilities to collapse reads in bam files to their 5' endLast synced: 12 months ago - Pushed: 11 months ago
record/workbench4record
To track modifications on a galaxy instance, in our way to design a production frame.Last synced: 5 months ago
phim/sravel/PodiumASM
Long-read sequencing is a highly accurate approach that can be used to challenging genomes, such as those containing stretches of highly repetitive elements and lot of structural variant. Long read sequencing can also be used to generate de novo assembly and genome finishing applications Lot of tools are used to make genome assembly with long reads every day and sometimes you don't know wich Assembler tool is the best for your organism. PodiumASM is here for you ! PodiumASM is is an open-source, scalable, modulable and traceable snakemake pipeline, able to compare multiple long read assemblies obtained from multiple assemblers tools. The workflow PodiumASM can help you to choose the best assemblies among all possibilities.Last synced: 7 months ago
