Package Usage: pypi: snakecdysis
You want to wrap your best snakemake workflow to be easy install and run, Snakecdysis is for you !!!!! Tha aim of Snakecdysis is to easy-wrapped snakemake workflow as python package and then build sub-commands to manage this. !!!!!
9 versions
Latest release: over 1 year ago
3 dependent packages
371 downloads last month
View more package details: https://packages.ecosystem.code.gouv.fr/registries/pypi.org/packages/snakecdysis
View more repository details: https://data.code.gouv.fr/hosts/forge.ird.fr/repositories/phim%2Fsravel%2Fsnakecdysis
Dependent Repos 6
diade/iKISS
Inference of significant kmers under selectionLast synced: 7 months ago - Pushed: 11 months ago
diade/culebront_pipeline
dojo snakemake assemblage long readsLast synced: 7 months ago - Pushed: 11 months ago
phim/sravel/PodiumASM
Long-read sequencing is a highly accurate approach that can be used to challenging genomes, such as those containing stretches of highly repetitive elements and lot of structural variant. Long read sequencing can also be used to generate de novo assembly and genome finishing applications Lot of tools are used to make genome assembly with long reads every day and sometimes you don't know wich Assembler tool is the best for your organism. PodiumASM is here for you ! PodiumASM is is an open-source, scalable, modulable and traceable snakemake pipeline, able to compare multiple long read assemblies obtained from multiple assemblers tools. The workflow PodiumASM can help you to choose the best assemblies among all possibilities.Last synced: 7 months ago
