GitHub / genotoul-bioinfo / rnaseq
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
JSON API: https://data.code.gouv.fr/api/v1/hosts/GitHub/repositories/genotoul-bioinfo%2Frnaseq
Fork of nf-core/rnaseq
Stars: 0
Forks: 1
Open issues: 0
License: mit
Language: Nextflow
Size: 48.7 MB
Dependencies parsed at:
20
Created at: over 6 years ago
Updated at: over 5 years ago
Pushed at: over 6 years ago
Last synced at: 7 days ago
Dockerfile
docker
- nfcore/base latest build
environment.yml
conda
- bioconductor-dupradar 1.8.0.*
- bioconductor-edger 3.20.7.*
- deeptools 3.1.3.*
- fastqc 0.11.8.*
- gffread 0.9.9.*
- hisat2 2.1.0.*
- multiqc 1.6.*
- openjdk 8.0.144.*
- picard 2.18.14.*
- preseq 2.0.3.*
- r-data.table 1.11.4.*
- r-gplots 3.0.1.*
- r-markdown 0.8.*
- rseqc 2.6.4.*
- samtools 1.9.*
- star 2.6.1b.*
- stringtie 1.3.4.*
- subread 1.6.2.*
- trim-galore 0.5.0.*