forgemia.inra.fr / metexplore 35 Repositories
metexplore/met4j
Java library for metabolic networks
Last synced at: 5 months ago - Stars: 3 - Forks: 2
metexplore/cbm/dexom-python
diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library github mirror: https://github.com/MetExplore/dexom-python
Last synced at: 6 months ago - Stars: 0 - Forks: 0
metexplore/metexplore-web/metexplore-training
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metexplore/metexplore-api/metexplore3-nodejs-api
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0
metexplore/cbm/samba-project/samba
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
metexplore/cbm/ocmmed
Obtaining cell-specific metabolic models through enumeration with DEXOM
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metexplore/cbm/MANA
MANA: mMoA identification Assisted by modelling and Network Analysis. Code and test case for the following article : A strategy to detect metabolic changes induced by exposure to chemicals from large sets of condition-specific metabolic models computed with enumeration techniques
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metexplore/gsam
compute Genome Scale Atom Mapping
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
metexplore/websemantic/extraction-pipeline
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
metexplore/cbm/samba-project/sambaflux
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metexplore/goliath/goliath-models
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metexplore/metexplore-api/metexplore3-api-types
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metexplore/metexplore-api/metexplore3-api-specs
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metexplore/met4j-group/met4j-galaxy
Galaxy wrappers for met4j apps
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metexplore/cbm/samba-project/sambar
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metexplore/tools/metabolomics2network
Python code to map metabolites (including lipids) to metabolic networks using ontology.
Last synced at: 5 months ago - Stars: 0 - Forks: 0
metexplore/tools/degradation-products-search
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metexplore/cbm/pva
pathway variability analysis using the miom library
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metexplore/tools/twin-search
Tool for 'Twin Peaks' analysis, detecting pairs of heavy & native forms of compounds in mz data
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metexplore/cbm/samba-project/sambar-shiny
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metexplore/cbm/samba-project/sambar.lite
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metexplore/cbm/met4j-dynamicrfba-singularity
Dynamic RFBA. Inspired by https://www.sciencedirect.com/science/article/pii/S0022519301924051?via%3Dihub.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metexplore/cbm/met4j-flux-obsolete
Obsolete. This modular version was not easy to manage. See packages in orgemia.inra.fr/metexplore/cbm/met4j-flux
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metexplore/met4j-group/tutorialmet4j
Tutorial for met4j
Last synced at: 5 months ago - Stars: 0 - Forks: 0
metexplore/met4j-singularity
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
metexplore/cbm/dexom
Diversity-based enumeration of optimal context-specific metabolic networks
Last synced at: 6 months ago - Stars: 0 - Forks: 0
metexplore/cbm/fvabiomarkers
Juliette's internship project
Last synced at: 7 months ago - Stars: 1 - Forks: 0