gitlab.cirad.fr / agap / workflows
agap/workflows/comparativegenomics
A Snakemake workflow to identify syntenic blocks and orthogroup for a set of species
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
agap/workflows/rna_seq
A Snakemake workflow for producing count matrix suitable for differential expression analysis and formatted for DIANE.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
agap/workflows/genomeassembly
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agap/workflows/snakeblast
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agap/workflows/indexing_genome
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agap/workflows/cactus-pangenome
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agap/workflows/funcannotate
# A snakemake workflow for functional annotation
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agap/workflows/GATK
A snakemake workflow for SNP Calling using GATK4
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agap/workflows/gene-family
A snakemake workflow for phylogenetic analysis of protein families
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agap/workflows/cutandtag
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