gitlab.pasteur.fr / aaristov / multichip-snakemake
Process the droplet chips using snakemake pipelines.
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Created at: almost 3 years ago
Updated at: 11 months ago
Pushed at: 11 months ago
Last synced at: 12 months ago
requirements.txt
pypi
- ConfigArgParse ==1.7
- GitPython ==3.1.36
- Jinja2 ==3.1.2
- MarkupSafe ==2.1.3
- Pillow ==10.0.1
- PuLP ==2.7.0
- PyWavelets ==1.4.1
- PyYAML ==6.0.1
- appdirs ==1.4.4
- asciitree ==0.3.3
- attrs ==23.1.0
- certifi ==2023.7.22
- charset-normalizer ==3.2.0
- click ==8.1.7
- cloudpickle ==2.2.1
- connection-pool ==0.0.3
- contourpy ==1.1.1
- cycler ==0.11.0
- dask ==2023.5.0
- datrie ==0.8.2
- docutils ==0.20.1
- dpath ==2.1.6
- entrypoints ==0.4
- fasteners ==0.18
- fastjsonschema ==2.18.0
- fire ==0.5.0
- fonttools ==4.42.1
- fsspec ==2023.9.1
- gitdb ==4.0.10
- humanfriendly ==10.0
- idna ==3.4
- imageio ==2.31.3
- importlib-metadata ==6.8.0
- importlib-resources ==6.0.1
- jsonschema ==4.19.0
- jsonschema-specifications ==2023.7.1
- jupyter_core ==5.3.1
- kiwisolver ==1.4.5
- lazy_loader ==0.3
- locket ==1.0.0
- matplotlib ==3.7.3
- nbformat ==5.9.2
- nd2 ==0.7.2
- networkx ==3.1
- numcodecs ==0.11.0
- numpy ==1.24.4
- packaging ==23.1
- pandas ==2.0.3
- partd ==1.4.0
- pkgutil_resolve_name ==1.3.10
- plac ==1.3.5
- platformdirs ==3.10.0
- psutil ==5.9.5
- pyparsing ==3.1.1
- python-dateutil ==2.8.2
- pytz ==2023.3.post1
- referencing ==0.30.2
- requests ==2.31.0
- reretry ==0.11.8
- resource-backed-dask-array ==0.1.0
- rpds-py ==0.10.3
- scikit-image ==0.21.0
- scipy ==1.10.1
- seaborn ==0.12.2
- six ==1.16.0
- smart-open ==6.4.0
- smmap ==5.0.1
- snakemake ==7.32.4
- stopit ==1.1.2
- tabulate ==0.9.0
- termcolor ==2.3.0
- throttler ==1.2.2
- tifffile ==2023.7.10
- toolz ==0.12.0
- toposort ==1.10
- traitlets ==5.10.0
- typing_extensions ==4.8.0
- tzdata ==2023.3
- urllib3 ==2.0.4
- wrapt ==1.15.0
- yte ==1.5.1
- zarr ==2.16.1
- zarr-tools ==0.4.5
- zipp ==3.17.0