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forgemia.inra.fr / geapsi 6 Repositories

geapsi/pipeline/specifics_ortho_kb

Nextflow pipeline creating a Neo4j Ortho_KB database.

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geapsi/pipeline/panzone

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geapsi/pipeline/specifics_syntenymcscanx

Nextflow pipeline to extract syntenic blocks using the MCScanX program.

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geapsi/pipeline/specifics_alignmarkers

Still under development

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geapsi/ecp-paper/ortholegkb_data

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geapsi/recp/org.psativum.eg.db

orgDB containing annotation for Pisum sativum genome v1 Kreplak, J., Madoui, MA., Cápal, P. et al. A reference genome for pea provides insight into legume genome evolution. Nat Genet 51, 1411–1422 (2019). https://doi.org/10.1038/s41588-019-0480-1

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