forgemia.inra.fr / sk8 / sk8-apps / ijpb / rflomics
L'application rflomics est un package R couplé à une interface shiny permettant la gestion, l'analyse et l'intégration statistique de plusieurs jeux et types de données -omics: RNAseq, proteomics et metabolomics (pour le moment). Lien vers l'application : https://rflomics.sk8.inrae.fr
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Dependencies parsed at:
57
Created at: over 1 year ago
Updated at: 8 months ago
Pushed at: 11 months ago
Last synced at: 7 months ago
DESCRIPTION
cran
- R >= 3.5.0 depends
- AnnotationDbi * imports
- BiocParallel * imports
- ComplexHeatmap * imports
- DT * imports
- EnhancedVolcano * imports
- FactoMineR * imports
- MOFA2 * imports
- MultiAssayExperiment * imports
- RColorBrewer * imports
- S4Vectors * imports
- SummarizedExperiment * imports
- UpSetR * imports
- clusterProfiler * imports
- clustermq * imports
- colourpicker * imports
- coseq * imports
- data.table * imports
- dplyr * imports
- edgeR * imports
- enrichplot * imports
- ggplot2 * imports
- ggpubr * imports
- grDevices * imports
- gridExtra * imports
- htmltools * imports
- kableExtra * imports
- limma * imports
- magrittr * imports
- methods * imports
- mixOmics * imports
- org.At.tair.db * imports
- pathview * imports
- pheatmap * imports
- purrr * imports
- qgraph * imports
- reactable * imports
- reshape2 * imports
- reticulate * imports
- shiny * imports
- shinyBS * imports
- shinyFiles * imports
- shinyWidgets * imports
- shinydashboard * imports
- statmod * imports
- stats * imports
- stringr * imports
- tibble * imports
- tidyr * imports
- tidyselect * imports
- utils * imports
- vroom * imports
- BiocStyle * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests
Dockerfile
docker
- rocker/r-ver 4.4.0 build